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  5. Sopen03g026100

Sopen03g026100


Description : Region in Clathrin and VPS


Gene families : OG_42_0001928 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001928_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g026100
Cluster HCCA clusters: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
Bradi4g26877 No alias Clathrin, heavy chain 0.02 Orthogroups_2024-Update
Brara.C03355.1 No alias heavy chain of clathrin triskelion 0.05 Orthogroups_2024-Update
Cre02.g101400 No alias Clathrin, heavy chain 0.02 Orthogroups_2024-Update
Glyma.14G195400 No alias Clathrin, heavy chain 0.03 Orthogroups_2024-Update
HORVU4Hr1G024710.12 No alias heavy chain of clathrin triskelion 0.04 Orthogroups_2024-Update
Mp6g19660.1 No alias heavy chain of clathrin triskelion 0.04 Orthogroups_2024-Update
Potri.009G073300 No alias Clathrin, heavy chain 0.02 Orthogroups_2024-Update
Pp1s147_10V6 No alias F9F8.6; clathrin heavy chain, putative [KO:K04646]... 0.02 Orthogroups_2024-Update
Pp1s7_102V6 No alias F9F8.6; clathrin heavy chain, putative [KO:K04646]... 0.03 Orthogroups_2024-Update
Sobic.008G003700.1 No alias heavy chain of clathrin triskelion 0.05 Orthogroups_2024-Update
Solyc03g096000 No alias Clathrin heavy chain (AHRD V3.3 *** K4BJ22_SOLLC) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA InterProScan predictions
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA InterProScan predictions
CC GO:0030132 clathrin coat of coated pit IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR022365 Clathrin_H-chain_propeller_rpt 22 56
IPR022365 Clathrin_H-chain_propeller_rpt 154 197
IPR015348 Clathrin_H-chain_linker_core 344 367
IPR000547 Clathrin_H-chain/VPS_repeat 850 976
IPR000547 Clathrin_H-chain/VPS_repeat 1146 1281
IPR000547 Clathrin_H-chain/VPS_repeat 993 1132
IPR000547 Clathrin_H-chain/VPS_repeat 701 840
IPR000547 Clathrin_H-chain/VPS_repeat 557 688
IPR000547 Clathrin_H-chain/VPS_repeat 1289 1431
IPR000547 Clathrin_H-chain/VPS_repeat 1440 1579
No external refs found!