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  5. Sopen03g026850

Sopen03g026850


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g026850
Cluster HCCA clusters: Cluster_258

Target Alias Description ECC score Gene Family Method Actions
LOC_Os10g01440 No alias retrotransposon protein, putative, Ty1-copia subclass 0.03 Orthogroups_2024-Update
Solyc11g030660 No alias No description available 0.04 Orthogroups_2024-Update
Solyc11g051150 No alias No description available 0.04 Orthogroups_2024-Update
Sopen09g022050 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen10g015220 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g005690 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update
evm.model.contig_3735.2 No alias (p10978|polx_tobac : 102.0) Retrovirus-related Pol... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA InterProScan predictions
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002156 RNaseH_domain 417 499
IPR013103 RVT_2 1548 1789
IPR001584 Integrase_cat-core 502 555
IPR001584 Integrase_cat-core 1163 1278
IPR025724 GAG-pre-integrase_dom 1079 1150
IPR029472 Copia-like_N 644 683
No external refs found!