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  5. Sopen03g027570

Sopen03g027570


Description : PPR repeat family


Gene families : OG_42_0005523 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005523_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g027570
Cluster HCCA clusters: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
At3g18110 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.03 Orthogroups_2024-Update
Seita.4G038900.1 No alias plastidial splicing factor *(EMB1270) 0.02 Orthogroups_2024-Update
Solyc03g096830 No alias Pentatricopeptide repeat-containing protein, putative... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 403 433
IPR002885 Pentatricopeptide_repeat 1066 1094
IPR002885 Pentatricopeptide_repeat 926 954
IPR002885 Pentatricopeptide_repeat 960 989
IPR002885 Pentatricopeptide_repeat 894 918
IPR002885 Pentatricopeptide_repeat 1136 1164
IPR002885 Pentatricopeptide_repeat 715 743
IPR002885 Pentatricopeptide_repeat 1102 1129
IPR002885 Pentatricopeptide_repeat 260 304
IPR002885 Pentatricopeptide_repeat 820 863
IPR002885 Pentatricopeptide_repeat 435 483
IPR002885 Pentatricopeptide_repeat 508 550
IPR002885 Pentatricopeptide_repeat 991 1040
IPR002885 Pentatricopeptide_repeat 319 378
No external refs found!