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  5. Sopen03g027900

Sopen03g027900


Description : WD domain, G-beta repeat


Gene families : OG_42_0001305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g027900
Cluster HCCA clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
At5g16750 No alias Transducin family protein / WD-40 repeat family protein... 0.1 Orthogroups_2024-Update
Bradi5g20040 No alias Transducin family protein / WD-40 repeat family protein 0.11 Orthogroups_2024-Update
Brara.B00677.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.J01854.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Brara.J02073.1 No alias SSU processome assembly factor *(TOZ) 0.06 Orthogroups_2024-Update
Cre07.g344050 No alias Transducin family protein / WD-40 repeat family protein 0.06 Orthogroups_2024-Update
Glyma.17G089100 No alias Transducin family protein / WD-40 repeat family protein 0.04 Orthogroups_2024-Update
HORVU2Hr1G106110.11 No alias SSU processome assembly factor *(TOZ) 0.05 Orthogroups_2024-Update
Kfl00871_0040 kfl00871_0040_v1.1 (at5g16750 : 795.0) Encodes a nucleolar localized WD-40... 0.02 Orthogroups_2024-Update
Mp8g08070.1 No alias SSU processome assembly factor (TOZ) 0.02 Orthogroups_2024-Update
Potri.013G079600 No alias Transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
Pp1s301_39V6 No alias wd40-repeat protein 0.07 Orthogroups_2024-Update
Seita.7G219600.1 No alias SSU processome assembly factor *(TOZ) 0.08 Orthogroups_2024-Update
Sobic.006G198600.1 No alias SSU processome assembly factor *(TOZ) 0.08 Orthogroups_2024-Update
Solyc03g097160 No alias Transducin/WD40 repeat-like superfamily protein (AHRD... 0.18 Orthogroups_2024-Update
evm.model.contig_3462.1 No alias (at5g16750 : 203.0) Encodes a nucleolar localized WD-40... 0.02 Orthogroups_2024-Update
evm.model.tig00000704.60 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
evm.model.tig00000704.61 No alias (at5g16750 : 313.0) Encodes a nucleolar localized WD-40... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006364 rRNA processing IEA InterProScan predictions
CC GO:0032040 small-subunit processome IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013934 SSU_processome_Utp13 670 803
IPR001680 WD40_repeat 433 470
IPR001680 WD40_repeat 568 605
IPR001680 WD40_repeat 387 427
IPR001680 WD40_repeat 532 563
IPR001680 WD40_repeat 57 88
IPR001680 WD40_repeat 179 216
IPR001680 WD40_repeat 93 130
IPR001680 WD40_repeat 136 174
IPR001680 WD40_repeat 491 521
No external refs found!