Sopen03g028060

Description : tRNA synthetases class II (A)

Gene families : OG_42_0001631 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001631_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen03g028060
Cluster	HCCA clusters: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
425880	No alias	Alanyl-tRNA synthetase, class IIc	0.01	Orthogroups_2024-Update
Bradi1g44530	No alias	Alanyl-tRNA synthetase, class IIc	0.03	Orthogroups_2024-Update
Cre02.g143200	No alias	Alanyl-tRNA synthetase	0.02	Orthogroups_2024-Update
Cre08.g368900	No alias	Alanyl-tRNA synthetase, class IIc	0.03	Orthogroups_2024-Update
LOC_Os10g10244	No alias	alanyl-tRNA synthetase, putative, expressed	0.02	Orthogroups_2024-Update
Mp1g23620.1	No alias	alanine-tRNA ligase	0.02	Orthogroups_2024-Update
Solyc01g111990	No alias	Alanine--tRNA ligase (AHRD V3.3 *** A0A0R0JGB6_SOYBN)	0.04	Orthogroups_2024-Update
Solyc03g097290	No alias	DB199	0.07	Orthogroups_2024-Update
evm.model.tig00001086.33	No alias	(at5g22800 : 600.0) A locus involved in embryogenesis....	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	InterProScan predictions
MF	GO:0004813	alanine-tRNA ligase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	None	Extended
BP	GO:0006419	alanyl-tRNA aminoacylation	IEA	InterProScan predictions
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003890	MIF4G-like_typ-3	937	1138
IPR018164	Ala-tRNA-synth_IIc_N	1476	2050
IPR018164	Ala-tRNA-synth_IIc_N	70	627
IPR012947	tRNA_SAD	2149	2207
IPR003156	DHHA1_dom	2264	2409
IPR003891	Initiation_fac_eIF4g_MI	1225	1312

External Links

No external refs found!

Sopen03g028060

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation