Sopen03g028570

Description : Poly A polymerase head domain

Gene families : OG_42_0002409 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002409_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen03g028570
Cluster	HCCA clusters: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g76307	No alias	Polynucleotide adenylyltransferase family protein	0.03	Orthogroups_2024-Update
Brara.F02540.1	No alias	Unknown function	0.05	Orthogroups_2024-Update
Brara.F02603.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Glyma.08G009000	No alias	Polynucleotide adenylyltransferase family protein	0.03	Orthogroups_2024-Update
Glyma.11G084602	No alias	Polynucleotide adenylyltransferase family protein	0.03	Orthogroups_2024-Update
PSME_00030616-RA	No alias	(at5g23690 : 95.9) Polynucleotide adenylyltransferase...	0.01	Orthogroups_2024-Update
Potri.005G100100	No alias	Polynucleotide adenylyltransferase family protein	0.02	Orthogroups_2024-Update
Seita.9G552600.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Solyc03g032180	No alias	Poly(A) polymerase, putative (AHRD V3.3 *** B9S6T6_RICCO)	0.03	Orthogroups_2024-Update
Solyc03g097830	No alias	Poly (A) polymerase (AHRD V3.3 *** A0A0B0NTQ5_GOSAR)	0.08	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR032828	PolyA_RNA-bd	235	296
IPR002646	PolA_pol_head_dom	80	207

External Links

No external refs found!