Sopen03g030070

Description : RNA polymerase Rpb2, domain 6

Gene families : OG_42_0000798 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000798_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen03g030070
Cluster	HCCA clusters: Cluster_188

Target	Alias	Description	ECC score	Gene Family Method
Bradi5g23540	No alias	nuclear RNA polymerase D2A	0.02	Orthogroups_2024-Update
Glyma.04G061000	No alias	nuclear RNA polymerase D2A	0.03	Orthogroups_2024-Update
Kfl00026_0050	kfl00026_0050_v1.1	(at5g45140 : 1509.0) Encodes a subunit of RNA polymerase...	0.02	Orthogroups_2024-Update
Mp6g06170.1	No alias	subunit 2 of Pol III RNA polymerase	0.02	Orthogroups_2024-Update
Potri.015G003000	No alias	nuclear RNA polymerase C2	0.02	Orthogroups_2024-Update
Pp1s84_245V6	No alias	rna polymerase ii second largest subunit	0.03	Orthogroups_2024-Update
Seita.7G258200.1	No alias	component *(NRPE2) of RNA polymerase V complex &...	0.04	Orthogroups_2024-Update
Seita.9G156200.1	No alias	component *(NRPB2) of RNA polymerase II complex	0.04	Orthogroups_2024-Update
Sobic.006G236000.2	No alias	component *(NRPE2) of RNA polymerase V complex &...	0.02	Orthogroups_2024-Update
Solyc03g110880	No alias	RNA polymerase 4 second largest subunit (RPD2)	0.03	Orthogroups_2024-Update
Solyc10g078860	No alias	DNA-directed RNA polymerase subunit beta (AHRD V3.3 ***...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007646	RNA_pol_Rpb2_4	606	666
IPR007641	RNA_pol_Rpb2_7	1111	1208
IPR007120	DNA-dir_RNAP_su2_dom	739	1109
IPR007642	RNA_pol_Rpb2_2	288	433
IPR007645	RNA_pol_Rpb2_3	510	569
IPR007644	RNA_pol_bsu_protrusion	76	470
IPR007647	RNA_pol_Rpb2_5	682	729

External Links

No external refs found!

Sopen03g030070

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation