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  5. Sopen03g031590

Sopen03g031590


Description : WD domain, G-beta repeat


Gene families : OG_42_0006352 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006352_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g031590
Cluster HCCA clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Brara.B01499.1 No alias LSU processome assembly factor *(NLE) 0.02 Orthogroups_2024-Update
Cre01.g000600 No alias WD-40 repeat family protein / notchless protein, putative 0.04 Orthogroups_2024-Update
Solyc03g112530 No alias Transducin/WD40 repeat-like superfamily protein (AHRD... 0.09 Orthogroups_2024-Update
evm.model.contig_2075.1 No alias (at5g52820 : 508.0) WD-40 repeat family protein /... 0.02 Orthogroups_2024-Update
evm.model.tig00000144.74 No alias (at5g52820 : 184.0) WD-40 repeat family protein /... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 368 400
IPR001680 WD40_repeat 199 238
IPR001680 WD40_repeat 153 190
IPR001680 WD40_repeat 283 356
IPR001680 WD40_repeat 405 442
IPR001680 WD40_repeat 450 483
IPR001680 WD40_repeat 243 278
IPR001680 WD40_repeat 111 148
IPR012972 NLE 23 83
No external refs found!