Sopen03g032210

Description : Pectate lyase

Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen03g032210
Cluster	HCCA clusters: Cluster_277

Target	Alias	Description	ECC score	Gene Family Method
Brara.F00890.1	No alias	pectate lyase & EC_4.2 carbon-oxygen lyase	0.02	Orthogroups_2024-Update
Glyma.13G145900	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
HORVU2Hr1G002880.2	No alias	pectate lyase & EC_4.2 carbon-oxygen lyase	0.02	Orthogroups_2024-Update
MA_10437227g0010	No alias	(at4g24780 : 367.0) Pectin lyase-like superfamily...	0.02	Orthogroups_2024-Update
PSME_00017512-RA	No alias	(at4g24780 : 545.0) Pectin lyase-like superfamily...	0.02	Orthogroups_2024-Update
Sopen03g012780	No alias	Pectate lyase	0.03	Orthogroups_2024-Update
Sopen09g024960	No alias	Pectate lyase	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	None	Extended
MF	GO:0030570	pectate lyase activity	IEA	InterProScan predictions

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002022	Pec_lyase	172	352
IPR007524	Pec_lyase_N	24	76

External Links

No external refs found!