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  5. Sopen03g034270

Sopen03g034270


Description : AAA domain (Cdc48 subfamily)


Gene families : OG_42_0000227 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000227_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g034270
Cluster HCCA clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
A4A49_26399 No alias chaperone protein clpb1 0.03 Orthogroups_2024-Update
Bradi2g49660 No alias heat shock protein 101 0.05 Orthogroups_2024-Update
Bradi3g44335 No alias CLPC homologue 1 0.02 Orthogroups_2024-Update
Bradi3g44341 No alias CLPC homologue 1 0.02 Orthogroups_2024-Update
Cre11.g467575 No alias casein lytic proteinase B3 0.03 Orthogroups_2024-Update
GRMZM2G360681 No alias heat shock protein 101 0.02 Orthogroups_2024-Update
Glyma.04G062200 No alias casein lytic proteinase B4 0.04 Orthogroups_2024-Update
Glyma.05G022200 No alias heat shock protein 101 0.03 Orthogroups_2024-Update
Glyma.06G202200 No alias heat shock protein 101 0.04 Orthogroups_2024-Update
Glyma.18G264400 No alias casein lytic proteinase B3 0.02 Orthogroups_2024-Update
HORVU6Hr1G028690.3 No alias organellar chaperone *(Clp-p/Clp-m) 0.03 Orthogroups_2024-Update
Mp1g16450.1 No alias cytosolic chaperone (Hsp101) 0.02 Orthogroups_2024-Update
PSME_00000476-RA No alias (q6f2y7|hs101_orysa : 1375.0) Heat shock protein 101 -... 0.03 Orthogroups_2024-Update
PSME_00000477-RA No alias (q6f2y7|hs101_orysa : 1387.0) Heat shock protein 101 -... 0.04 Orthogroups_2024-Update
PSME_00005341-RA No alias (q6f2y7|hs101_orysa : 1383.0) Heat shock protein 101 -... 0.04 Orthogroups_2024-Update
Potri.015G056900 No alias heat shock protein 101 0.05 Orthogroups_2024-Update
Pp1s196_10V6 No alias chaperone clpb expressed 0.02 Orthogroups_2024-Update
Pp1s300_55V6 No alias heat shock protein 101 0.03 Orthogroups_2024-Update
Solyc03g115230 No alias Solanum lycopersicum heat shock protein 0.02 Orthogroups_2024-Update
evm.model.contig_3516.2 No alias (at1g74310 : 794.0) Encodes ClpB1, which belongs to the... 0.03 Orthogroups_2024-Update
evm.model.contig_487.1 No alias (p35100|clpc_pea : 624.0) ATP-dependent Clp protease... 0.03 Orthogroups_2024-Update
evm.model.tig00000655.28 No alias (at5g50920 : 1134.0) Encodes a protein that is similar... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004176 Clp_N 97 147
IPR004176 Clp_N 17 56
IPR019489 Clp_ATPase_C 768 847
IPR003959 ATPase_AAA_core 598 762
IPR003959 ATPase_AAA_core 205 318
No external refs found!