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  5. Sopen03g034920

Sopen03g034920


Description : IBR domain


Gene families : OG_42_0000330 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g034920
Cluster HCCA clusters: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
At2g25360 No alias RBR-type E3 ubiquitin transferase... 0.03 Orthogroups_2024-Update
Brara.G00645.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.03 Orthogroups_2024-Update
LOC_Os11g01240 No alias IBR domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.006G123500 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Seita.2G215600.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.02 Orthogroups_2024-Update
Solyc03g115920 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G14250.1) 0.02 Orthogroups_2024-Update
evm.model.tig00000123.19 No alias (at4g19670 : 110.0) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002867 IBR_dom 146 193
IPR002867 IBR_dom 210 260
No external refs found!