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  5. Sopen03g036320

Sopen03g036320


Description : CobW/HypB/UreG, nucleotide-binding domain


Gene families : OG_42_0001486 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001486_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g036320
Cluster HCCA clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
106303 No alias Cobalamin biosynthesis CobW-like protein 0.03 Orthogroups_2024-Update
At1g80480 No alias At1g80480 [Source:UniProtKB/TrEMBL;Acc:Q9M8L6] 0.04 Orthogroups_2024-Update
Bradi3g54350 No alias plastid transcriptionally active 17 0.06 Orthogroups_2024-Update
Brara.B02418.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) 0.03 Orthogroups_2024-Update
Glyma.10G291200 No alias plastid transcriptionally active 17 0.03 Orthogroups_2024-Update
Glyma.20G240400 No alias plastid transcriptionally active 17 0.06 Orthogroups_2024-Update
HORVU6Hr1G086970.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) 0.02 Orthogroups_2024-Update
Kfl00303_0150 kfl00303_0150_v1.... (at1g80480 : 334.0) plastid transcriptionally active 17... 0.02 Orthogroups_2024-Update
LOC_Os02g55630 No alias COBW domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Potri.001G201400 No alias plastid transcriptionally active 17 0.03 Orthogroups_2024-Update
Pp1s31_130V6 No alias T21F11.27; PRLI-interacting factor L, putative... 0.03 Orthogroups_2024-Update
Sobic.006G202000.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) 0.03 Orthogroups_2024-Update
Solyc03g117430 No alias COBW domain-containing protein 1 (AHRD V3.3 *** A0A0B2RY32_GLYSO) 0.07 Orthogroups_2024-Update
Sopen08g024660 No alias CobW/HypB/UreG, nucleotide-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011629 Cbl_biosynth_CobW-like_C 367 461
IPR003495 CobW/HypB/UreG_dom 98 282
No external refs found!