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  5. Sopen03g037190

Sopen03g037190


Description : PPR repeat family


Gene families : OG_42_0007676 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007676_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g037190
Cluster HCCA clusters: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
At5g61990 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.02 Orthogroups_2024-Update
PSME_00047156-RA No alias (at5g61990 : 541.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Potri.015G105400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 151 175
IPR002885 Pentatricopeptide_repeat 531 560
IPR002885 Pentatricopeptide_repeat 774 799
IPR002885 Pentatricopeptide_repeat 872 903
IPR002885 Pentatricopeptide_repeat 278 310
IPR002885 Pentatricopeptide_repeat 317 366
IPR002885 Pentatricopeptide_repeat 213 260
IPR002885 Pentatricopeptide_repeat 632 681
IPR002885 Pentatricopeptide_repeat 387 436
IPR002885 Pentatricopeptide_repeat 562 609
IPR002885 Pentatricopeptide_repeat 806 854
IPR002885 Pentatricopeptide_repeat 702 751
IPR002885 Pentatricopeptide_repeat 458 506
No external refs found!