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  5. Sopen03g038300

Sopen03g038300


Description : CRS1 / YhbY (CRM) domain


Gene families : OG_42_0000921 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000921_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g038300
Cluster HCCA clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
20706 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
Bradi2g17390 No alias CRS1 / YhbY (CRM) domain-containing protein 0.05 Orthogroups_2024-Update
Bradi3g21852 No alias ortholog of maize chloroplast splicing factor CRS1 0.02 Orthogroups_2024-Update
Bradi4g14900 No alias CRM family member 3A 0.07 Orthogroups_2024-Update
Bradi4g28800 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Bradi5g12660 No alias CRM family member 2 0.02 Orthogroups_2024-Update
Brara.A02935.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.A02949.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E01957.1 No alias plastidial RNA splicing factor *(CFM3) 0.03 Orthogroups_2024-Update
GRMZM2G078412 No alias ortholog of maize chloroplast splicing factor CRS1 0.02 Orthogroups_2024-Update
Glyma.07G092300 No alias CRS1 / YhbY (CRM) domain-containing protein 0.04 Orthogroups_2024-Update
Glyma.17G054400 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Glyma.18G295000 No alias ortholog of maize chloroplast splicing factor CRS1 0.03 Orthogroups_2024-Update
Glyma.19G014000 No alias CRM family member 2 0.02 Orthogroups_2024-Update
HORVU1Hr1G083550.4 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os05g47850 No alias chloroplastic group IIA intron splicing facilitator... 0.03 Orthogroups_2024-Update
LOC_Os11g37990 No alias chloroplastic group IIA intron splicing facilitator... 0.02 Orthogroups_2024-Update
Potri.006G149000 No alias CRS1 / YhbY (CRM) domain-containing protein 0.08 Orthogroups_2024-Update
Potri.010G077100 No alias CRM family member 3A 0.03 Orthogroups_2024-Update
Potri.012G056100 No alias CRS1 / YhbY (CRM) domain-containing protein 0.05 Orthogroups_2024-Update
Pp1s142_94V6 No alias No description available 0.02 Orthogroups_2024-Update
Pp1s70_29V6 No alias crm family member 3 0.02 Orthogroups_2024-Update
Seita.2G185900.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.3G156100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.7G127900.1 No alias plastidial RNA splicing factor *(CFM2) 0.07 Orthogroups_2024-Update
Seita.8G170300.1 No alias plastidial RNA splicing factor *(CFM3) 0.03 Orthogroups_2024-Update
Sobic.002G181000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G169600.1 No alias plastidial RNA splicing factor *(CFM3) 0.04 Orthogroups_2024-Update
Sobic.006G110200.2 No alias plastidial RNA splicing factor *(CFM2) 0.04 Orthogroups_2024-Update
Sobic.009G223200.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc02g087250 No alias Chloroplastic group IIA intron splicing facilitator... 0.12 Orthogroups_2024-Update
Solyc03g119450 No alias Chloroplastic group IIA intron splicing facilitator CRS1... 0.08 Orthogroups_2024-Update
Solyc07g039500 No alias Chloroplastic group IIA intron splicing facilitator CRS1... 0.03 Orthogroups_2024-Update
Solyc09g083350 No alias Chloroplastic group IIA intron splicing facilitator... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 622 709
IPR001890 RNA-binding_CRM 412 496
IPR001890 RNA-binding_CRM 217 299
No external refs found!