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  5. Sopen03g038950

Sopen03g038950


Description : WD domain, G-beta repeat


Gene families : OG_42_0004382 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004382_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g038950
Cluster HCCA clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
A4A49_25591 No alias protein mut11 0.03 Orthogroups_2024-Update
At1g15440 No alias Periodic tryptophan protein 2... 0.05 Orthogroups_2024-Update
Bradi2g19560 No alias periodic tryptophan protein 2 0.12 Orthogroups_2024-Update
Brara.F01061.1 No alias SSU processome assembly factor *(UTP1/PWP2) 0.08 Orthogroups_2024-Update
Brara.H02532.1 No alias SSU processome assembly factor *(UTP1/PWP2) 0.07 Orthogroups_2024-Update
Cre06.g254150 No alias periodic tryptophan protein 2 0.09 Orthogroups_2024-Update
Glyma.09G084600 No alias periodic tryptophan protein 2 0.05 Orthogroups_2024-Update
Glyma.15G193000 No alias periodic tryptophan protein 2 0.09 Orthogroups_2024-Update
HORVU1Hr1G086380.1 No alias SSU processome assembly factor *(UTP1/PWP2) 0.06 Orthogroups_2024-Update
Kfl00198_0200 kfl00198_0200_v1.1 (at1g15440 : 905.0) periodic tryptophan protein 2... 0.02 Orthogroups_2024-Update
LOC_Os05g44320 No alias WD domain, G-beta repeat domain containing protein, expressed 0.04 Orthogroups_2024-Update
Mp1g17900.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.03 Orthogroups_2024-Update
Potri.001G173500 No alias periodic tryptophan protein 2 0.06 Orthogroups_2024-Update
Pp1s87_39V6 No alias T16N11.20; transducin family protein / WD-40 repeat... 0.06 Orthogroups_2024-Update
Seita.3G175900.1 No alias SSU processome assembly factor *(UTP1/PWP2) 0.1 Orthogroups_2024-Update
Sobic.009G201200.1 No alias SSU processome assembly factor *(UTP1/PWP2) 0.14 Orthogroups_2024-Update
Solyc03g120080 No alias WD40 repeat-like protein (AHRD V3.3 *** I0YM64_COCSC) 0.11 Orthogroups_2024-Update
evm.model.contig_3478.9 No alias (at1g15440 : 433.0) periodic tryptophan protein 2... 0.06 Orthogroups_2024-Update
evm.model.tig00000076.88 No alias (at1g15440 : 197.0) periodic tryptophan protein 2... 0.01 Orthogroups_2024-Update
evm.model.tig00000076.89 No alias (at1g15440 : 99.4) periodic tryptophan protein 2 (PWP2);... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 551 579
IPR001680 WD40_repeat 500 537
IPR001680 WD40_repeat 415 451
IPR001680 WD40_repeat 132 167
IPR001680 WD40_repeat 378 408
IPR007148 SSU_processome_Utp12 782 887
No external refs found!