Sopen03g039170

Description : NUP50 (Nucleoporin 50 kDa)

Gene families : OG_42_0004029 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004029_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen03g039170
Cluster	HCCA clusters: Cluster_149

Target	Alias	Description	ECC score	Gene Family Method
A4A49_33067	No alias	nuclear pore complex protein nup50b	0.02	Orthogroups_2024-Update
Bradi1g33117	No alias	NUP50 (Nucleoporin 50 kDa) protein	0.02	Orthogroups_2024-Update
Mp5g18610.1	No alias	NUP50 nucleoporin of nuclear pore complex	0.01	Orthogroups_2024-Update
Solyc03g120280	No alias	Ran-binding protein 1 domain-containing (AHRD V3.3 ***...	0.05	Orthogroups_2024-Update
evm.model.tig00021612.44	No alias	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005643	nuclear pore	IEA	InterProScan predictions
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046907	intracellular transport	IEA	InterProScan predictions
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR015007	NUP2/50/61	13	76
IPR000156	Ran_bind_dom	318	432

External Links

No external refs found!