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  5. Sopen03g040440

Sopen03g040440


Description : FAR1 DNA-binding domain


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g040440
Cluster HCCA clusters: Cluster_239

Target Alias Description ECC score Gene Family Method Actions
Bradi4g15566 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Bradi4g16767 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Bradi4g23625 No alias FAR1-related sequence 5 0.02 Orthogroups_2024-Update
Bradi4g40020 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Bradi5g21820 No alias FAR1-related sequence 5 0.02 Orthogroups_2024-Update
Glyma.04G124300 No alias far-red elongated hypocotyls 3 0.03 Orthogroups_2024-Update
Glyma.14G000400 No alias FAR1-related sequence 5 0.06 Orthogroups_2024-Update
HORVU2Hr1G063550.3 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
HORVU3Hr1G011190.1 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os02g10840 No alias transposon protein, putative, unclassified, expressed 0.04 Orthogroups_2024-Update
LOC_Os02g39220 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g15930 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g40310 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g14040 No alias transposon protein, putative, unclassified, expressed 0.04 Orthogroups_2024-Update
LOC_Os11g14020 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Potri.009G170100 No alias FAR1-related sequence 5 0.02 Orthogroups_2024-Update
Seita.7G295500.1 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G340000.2 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
Solyc07g008700 No alias Far1-related sequence 9 (AHRD V3.3 *** A0A061E1V5_THECC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007527 Znf_SWIM 514 542
IPR018289 MULE_transposase_dom 228 320
IPR004330 FAR1_DNA_bnd_dom 28 115
No external refs found!