Sopen04g001070

Description : Matrixin

Gene families : OG_42_0000704 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000704_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen04g001070
Cluster	HCCA clusters: Cluster_123

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g78530	No alias	Matrixin family protein	0.02	Orthogroups_2024-Update
Bradi3g59680	No alias	Matrixin family protein	0.03	Orthogroups_2024-Update
GRMZM2G317386	No alias	Matrixin family protein	0.02	Orthogroups_2024-Update
Glyma.02G028000	No alias	Matrixin family protein	0.03	Orthogroups_2024-Update
Glyma.02G028200	No alias	Matrixin family protein	0.03	Orthogroups_2024-Update
Glyma.02G215700	No alias	matrix metalloproteinase	0.02	Orthogroups_2024-Update
Glyma.09G065900	No alias	matrix metalloproteinase	0.03	Orthogroups_2024-Update
HORVU6Hr1G076510.1	No alias	M10-class (Matrixin) metalloprotease & EC_3.4 hydrolase...	0.07	Orthogroups_2024-Update
Potri.008G027500	No alias	Matrixin family protein	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004222	metalloendopeptidase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006508	proteolysis	IEA	InterProScan predictions
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0031012	extracellular matrix	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044421	extracellular region part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001818	Pept_M10_metallopeptidase	159	322
IPR002477	Peptidoglycan-bd-like	61	115

External Links

No external refs found!