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  5. Sopen04g002090

Sopen04g002090


Description : B3 DNA binding domain


Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g002090
Cluster HCCA clusters: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
A4A49_27413 No alias ap2erf and b3 domain-containing transcription factor rav1 0.02 Orthogroups_2024-Update
At1g25560 No alias AP2/ERF and B3 domain-containing transcription repressor... 0.03 Orthogroups_2024-Update
Brara.A03401.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Brara.D02192.1 No alias RAV/NGATHA-type transcription factor 0.02 Orthogroups_2024-Update
Brara.J00079.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G082227 No alias AP2/B3-like transcriptional factor family protein 0.04 Orthogroups_2024-Update
GRMZM2G159592 No alias related to ABI3/VP1 1 0.03 Orthogroups_2024-Update
Glyma.01G087500 No alias AP2/B3 transcription factor family protein 0.05 Orthogroups_2024-Update
Glyma.02G099500 No alias AP2/B3 transcription factor family protein 0.06 Orthogroups_2024-Update
Glyma.10G204400 No alias AP2/B3 transcription factor family protein 0.05 Orthogroups_2024-Update
HORVU1Hr1G082670.6 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.02 Orthogroups_2024-Update
HORVU3Hr1G010190.5 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.03 Orthogroups_2024-Update
HORVU3Hr1G010240.1 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.03 Orthogroups_2024-Update
LOC_Os01g04800 No alias B3 DNA binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_246350g0010 No alias (at1g13260 : 168.0) Encodes an AP2/B3 domain... 0.03 Orthogroups_2024-Update
PSME_00021294-RA No alias (at1g13260 : 294.0) Encodes an AP2/B3 domain... 0.02 Orthogroups_2024-Update
PSME_00057154-RA No alias (at1g13260 : 282.0) Encodes an AP2/B3 domain... 0.02 Orthogroups_2024-Update
Potri.006G208100 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
Sobic.003G265200.1 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.06 Orthogroups_2024-Update
Solyc04g007000 No alias AP2/B3 transcription factor family protein (AHRD V3.3... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 65 113
IPR003340 B3_DNA-bd 200 293
No external refs found!