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  5. Solyc02g043850

Solyc02g043850


No description available


Gene families : OG_42_0000049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g043850
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Glyma.08G294500 No alias hAT transposon superfamily 0.03 Orthogroups_2024-Update
Glyma.12G152900 No alias hAT transposon superfamily 0.03 Orthogroups_2024-Update
LOC_Os01g28200 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g32380 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
MA_10332809g0010 No alias (at1g79740 : 151.0) hAT transposon superfamily;... 0.02 Orthogroups_2024-Update
MA_96731g0030 No alias (at5g33406 : 97.4) hAT dimerisation domain-containing... 0.02 Orthogroups_2024-Update
PSME_00003940-RA No alias (at1g79740 : 137.0) hAT transposon superfamily;... 0.03 Orthogroups_2024-Update
PSME_00039066-RA No alias (at3g17450 : 92.8) hAT dimerisation domain-containing... 0.02 Orthogroups_2024-Update
PSME_00052149-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00055084-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00055841-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Solyc03g063270 No alias No description available 0.03 Orthogroups_2024-Update
Solyc06g030510 No alias hAT transposon superfamily (AHRD V3.3 *** AT4G15020.2) 0.03 Orthogroups_2024-Update
Solyc09g012050 No alias HAT transposon superfamily protein, putative (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc10g055540 No alias HAT transposon superfamily (AHRD V3.3 *-* A0A061G5I4_THECC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006275 regulation of DNA replication IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
BP GO:0008156 negative regulation of DNA replication IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009611 response to wounding IEP Predicted GO
BP GO:0009890 negative regulation of biosynthetic process IEP Predicted GO
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0031324 negative regulation of cellular metabolic process IEP Predicted GO
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Predicted GO
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0048478 replication fork protection IEP Predicted GO
BP GO:0048523 negative regulation of cellular process IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:0051053 negative regulation of DNA metabolic process IEP Predicted GO
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051321 meiotic cell cycle IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Predicted GO
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!