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  5. Sopen04g002590

Sopen04g002590


Description : Helicase associated domain (HA2)


Gene families : OG_42_0000651 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000651_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g002590
Cluster HCCA clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
Bradi1g08607 No alias DEA(D/H)-box RNA helicase family protein 0.03 Orthogroups_2024-Update
Brara.F00410.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.J02700.1 No alias group-I intron splicing RNA helicase *(ABO6) 0.03 Orthogroups_2024-Update
Cre06.g266416 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.09G115600 No alias DEA(D/H)-box RNA helicase family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G039880.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G100900.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 557 689
IPR007502 Helicase-assoc_dom 753 827
IPR011545 DEAD/DEAH_box_helicase_dom 301 452
IPR014720 dsRBD_dom 1097 1159
IPR011709 DUF1605 908 990
No external refs found!