Sopen04g003350

Description : Glycosyl hydrolases family 28

Gene families : OG_42_0002108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen04g003350
Cluster	HCCA clusters: Cluster_66

Target	Alias	Description	ECC score	Gene Family Method
At1g48100	No alias	Polygalacturonase At1g48100...	0.03	Orthogroups_2024-Update
At1g56710	No alias	Pectin lyase-like superfamily protein...	0.04	Orthogroups_2024-Update
Brara.I05569.1	No alias	EC_3.2 glycosylase	0.03	Orthogroups_2024-Update
Brara.J00111.1	No alias	EC_3.2 glycosylase	0.03	Orthogroups_2024-Update
GRMZM2G026804	No alias	Pectin lyase-like superfamily protein	0.02	Orthogroups_2024-Update
Glyma.02G009300	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
Glyma.08G087900	No alias	Pectin lyase-like superfamily protein	0.05	Orthogroups_2024-Update
Glyma.09G031600	No alias	Pectin lyase-like superfamily protein	0.04	Orthogroups_2024-Update
Glyma.15G136700	No alias	Pectin lyase-like superfamily protein	0.04	Orthogroups_2024-Update
Glyma.19G219700	No alias	Pectin lyase-like superfamily protein	0.04	Orthogroups_2024-Update
LOC_Os01g19170	No alias	polygalacturonase, putative, expressed	0.02	Orthogroups_2024-Update
Solyc01g079130	No alias	Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G02460.1)	0.03	Orthogroups_2024-Update
Solyc04g008230	No alias	Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G48100.1)	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	InterProScan predictions
BP	GO:0005975	carbohydrate metabolic process	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	129	443

External Links

No external refs found!