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  5. Sopen04g003730

Sopen04g003730


Description : PPR repeat family


Gene families : OG_42_0009342 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009342_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Sopen04g003730
Cluster HCCA clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
At5g13770 No alias Pentatricopeptide repeat-containing protein At5g13770,... 0.07 Orthogroups_2024-Update
Bradi5g19320 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Brara.B00519.1 No alias Unknown function 0.05 Orthogroups_2024-Update
GRMZM2G076771 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G093720.1 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os04g49350 No alias PPR repeat domain containing protein, putative, expressed 0.05 Orthogroups_2024-Update
MA_7931826g0010 No alias (at5g13770 : 216.0) Pentatricopeptide repeat (PPR-like)... 0.03 Orthogroups_2024-Update
Potri.008G142900 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Potri.010G098700 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.06 Orthogroups_2024-Update
Seita.7G212200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G191500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc04g008570 No alias Pentatricopeptide repeat superfamily protein, putative... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 319 344
IPR002885 Pentatricopeptide_repeat 290 312
IPR002885 Pentatricopeptide_repeat 244 272
IPR002885 Pentatricopeptide_repeat 566 591
IPR002885 Pentatricopeptide_repeat 443 503
IPR002885 Pentatricopeptide_repeat 505 537
IPR002885 Pentatricopeptide_repeat 374 431
No external refs found!