1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc02g044010

Solyc02g044010


Description : LOW QUALITY:PIF1 helicase, putative (AHRD V3.3 *-* A0A061ECN6_THECC)


Gene families : OG_42_0000057 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g044010
Cluster HCCA clusters: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
At3g51700 No alias ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SCT8] 0.02 Orthogroups_2024-Update
Brara.B02726.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Glyma.13G024401 No alias PIF1 helicase 0.03 Orthogroups_2024-Update
Glyma.15G190000 No alias Function unknown 0.03 Orthogroups_2024-Update
LOC_Os01g45880 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g22500 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g44014 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc04g019320 No alias LOW QUALITY:PIF1-like helicase (AHRD V3.3 *-* A0A072TZ53_MEDTR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEA InterProScan predictions
MF GO:0003678 DNA helicase activity IEA InterProScan predictions
BP GO:0006281 DNA repair IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR010285 DNA_helicase_pif1-like 384 715
IPR025476 Helitron_helicase-like 2 153
No external refs found!