1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen04g004000

Sopen04g004000


Description : HMG (high mobility group) box


Gene families : OG_42_0000453 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000453_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g004000
Cluster HCCA clusters: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
A4A49_15500 No alias high mobility group b protein 7 0.05 Orthogroups_2024-Update
Brara.B03718.1 No alias DNA bending architectural protein *(HMG-B) 0.07 Orthogroups_2024-Update
Brara.I00619.1 No alias DNA bending architectural protein *(HMG-B) 0.04 Orthogroups_2024-Update
Cre11.g480950 No alias high mobility group B3 0.02 Orthogroups_2024-Update
Glyma.04G016800 No alias high mobility group B2 0.04 Orthogroups_2024-Update
Glyma.10G288300 No alias high-mobility group box 6 0.05 Orthogroups_2024-Update
Glyma.20G100600 No alias high-mobility group box 6 0.03 Orthogroups_2024-Update
Kfl00271_0080 kfl00271_0080_v1.1 (at5g23420 : 89.4) Encodes HMGB6, a protein belonging to... 0.02 Orthogroups_2024-Update
MA_86565g0010 No alias (at5g23420 : 100.0) Encodes HMGB6, a protein belonging... 0.05 Orthogroups_2024-Update
PSME_00011212-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00037596-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Sobic.007G000500.1 No alias DNA bending architectural protein *(HMG-B) 0.08 Orthogroups_2024-Update
Solyc02g082700 No alias High mobility group protein (AHRD V3.3 *** O49948_SOLTU) 0.06 Orthogroups_2024-Update
Solyc04g008820 No alias High mobility group protein (AHRD V3.3 *-* O49948_SOLTU) 0.11 Orthogroups_2024-Update
Sopen02g009310 No alias HMG (high mobility group) box 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 111 176
No external refs found!