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  5. Sopen04g004010

Sopen04g004010


Description : Leucine rich repeat


Gene families : OG_42_0001209 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001209_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g004010
Cluster HCCA clusters: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
A4A49_15308 No alias dna-damage-repairtoleration protein drt100 0.04 Orthogroups_2024-Update
A4A49_38283 No alias lrr receptor-like serinethreonine-protein kinase fls2 0.02 Orthogroups_2024-Update
Brara.I00620.1 No alias PNP peptide receptor *(PNP-R) 0.03 Orthogroups_2024-Update
Glyma.13G341500 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
MA_100087g0010 No alias (at5g23400 : 447.0) Leucine-rich repeat (LRR) family... 0.03 Orthogroups_2024-Update
MA_10433791g0010 No alias (at4g20140 : 235.0) Encodes GASSHO1 (GSO1), a putative... 0.03 Orthogroups_2024-Update
PSME_00048945-RA No alias (at5g23400 : 202.0) Leucine-rich repeat (LRR) family... 0.02 Orthogroups_2024-Update
Potri.001G017500 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update
Potri.003G207000 No alias Leucine-rich repeat (LRR) family protein 0.04 Orthogroups_2024-Update
Potri.009G064300 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
Seita.3G015900.1 No alias PNP peptide receptor *(PNP-R) 0.04 Orthogroups_2024-Update
Sobic.006G266900.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013210 LRR_N_plant-typ 31 71
IPR001611 Leu-rich_rpt 205 263
IPR001611 Leu-rich_rpt 468 527
IPR001611 Leu-rich_rpt 108 167
No external refs found!