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  5. Sopen04g004180

Sopen04g004180


Description : PPR repeat


Gene families : OG_42_0009146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g004180
Cluster HCCA clusters: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
Bradi5g10620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Brara.C04076.1 No alias RNA editing factor *(SLO2) 0.04 Orthogroups_2024-Update
Solyc04g009000 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 121 149
IPR002885 Pentatricopeptide_repeat 89 115
IPR002885 Pentatricopeptide_repeat 433 458
IPR002885 Pentatricopeptide_repeat 293 320
IPR002885 Pentatricopeptide_repeat 61 87
IPR002885 Pentatricopeptide_repeat 533 557
IPR002885 Pentatricopeptide_repeat 218 266
IPR002885 Pentatricopeptide_repeat 459 505
IPR002885 Pentatricopeptide_repeat 351 400
No external refs found!