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  5. Sopen04g004350

Sopen04g004350


Description : PPR repeat family


Gene families : OG_42_0009566 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009566_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g004350
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Sobic.001G451200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc04g009220 No alias Pentatricopeptide repeat-containing protein, putative... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 309 333
IPR002885 Pentatricopeptide_repeat 273 300
IPR002885 Pentatricopeptide_repeat 237 266
IPR002885 Pentatricopeptide_repeat 775 798
IPR002885 Pentatricopeptide_repeat 341 370
IPR002885 Pentatricopeptide_repeat 455 484
IPR002885 Pentatricopeptide_repeat 492 540
IPR002885 Pentatricopeptide_repeat 701 750
IPR002885 Pentatricopeptide_repeat 631 680
IPR002885 Pentatricopeptide_repeat 171 210
IPR002885 Pentatricopeptide_repeat 566 610
No external refs found!