Sopen04g005120

Description : JmjC domain, hydroxylase

Gene families : OG_42_0001408 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001408_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen04g005120
Cluster	HCCA clusters: Cluster_259

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g14600	No alias	Transcription factor jumonji (jmj) family protein / zinc...	0.03	Orthogroups_2024-Update
Glyma.09G083300	No alias	Transcription factor jumonji (jmj) family protein / zinc...	0.04	Orthogroups_2024-Update
Glyma.20G218400	No alias	Transcription factor jumonji (jmj) family protein / zinc...	0.03	Orthogroups_2024-Update
Seita.4G119000.1	No alias	histone demethylase *(PKDM7)	0.05	Orthogroups_2024-Update
Seita.6G099500.1	No alias	histone demethylase *(PKDM7)	0.02	Orthogroups_2024-Update
Sobic.004G338500.1	No alias	histone demethylase *(PKDM7)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004198	Znf_C5HC2	589	640
IPR003347	JmjC_dom	366	482
IPR003889	FYrich_C	1024	1108
IPR003888	FYrich_N	975	1017
IPR003349	JmjN	140	173

External Links

No external refs found!