Sopen04g005450

Description : CPSF A subunit region

Gene families : OG_42_0004635 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004635_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen04g005450
Cluster	HCCA clusters: Cluster_115

Target	Alias	Description	ECC score	Gene Family Method
At3g55200	No alias	Spliceosome-associated protein 130 B...	0.02	Orthogroups_2024-Update
Cre08.g372800	No alias	Cleavage and polyadenylation specificity factor (CPSF) A...	0.02	Orthogroups_2024-Update
Glyma.10G291300	No alias	Cleavage and polyadenylation specificity factor (CPSF) A...	0.05	Orthogroups_2024-Update
LOC_Os02g04480	No alias	cleavage and polyadenylation specificity factor,...	0.02	Orthogroups_2024-Update
Sobic.004G034700.1	No alias	component *(SF3B3) of splicing factor 3B complex	0.03	Orthogroups_2024-Update
evm.model.tig00001024.6	No alias	(at3g55200 : 185.0) Cleavage and polyadenylation...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004871	Cleavage/polyA-sp_fac_asu_C	858	1177

External Links

No external refs found!