Sopen04g005490

Description : ABC transporter transmembrane region

Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen04g005490
Cluster	HCCA clusters: Cluster_203

Target	Alias	Description	ECC score	Gene Family Method
169182	No alias	ATP binding cassette subfamily B4	0.02	Orthogroups_2024-Update
410515	No alias	ATP binding cassette subfamily B19	0.04	Orthogroups_2024-Update
A4A49_11372	No alias	abc transporter b family member 2	0.02	Orthogroups_2024-Update
At2g36910	No alias	ABC transporter B family member 1...	0.04	Orthogroups_2024-Update
Bradi2g11210	No alias	P-glycoprotein 21	0.02	Orthogroups_2024-Update
Brara.C01848.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Brara.F03123.1	No alias	auxin efflux transporter *(ABCB19) & subfamily ABCB transporter	0.04	Orthogroups_2024-Update
Glyma.02G094800	No alias	P-glycoprotein 20	0.03	Orthogroups_2024-Update
Glyma.19G021500	No alias	ATP binding cassette subfamily B19	0.04	Orthogroups_2024-Update
LOC_Os01g50100	No alias	ABC transporter, ATP-binding protein, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os01g50160	No alias	MDR-like ABC transporter, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os08g05690	No alias	ABC transporter, ATP-binding protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_3437g0010	No alias	(at3g28345 : 1374.0) ABC transporter family protein;...	0.03	Orthogroups_2024-Update
MA_62683g0010	No alias	(at2g36910 : 1072.0) Belongs to the family of...	0.03	Orthogroups_2024-Update
PSME_00016535-RA	No alias	(at3g28860 : 1775.0) Belongs to the family of...	0.05	Orthogroups_2024-Update
PSME_00021092-RA	No alias	(at3g28345 : 1204.0) ABC transporter family protein;...	0.02	Orthogroups_2024-Update
PSME_00046830-RA	No alias	(at3g28345 : 1028.0) ABC transporter family protein;...	0.03	Orthogroups_2024-Update
Potri.017G085000	No alias	ABC transporter family protein	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	81	353
IPR011527	ABC1_TM_dom	837	1098
IPR003439	ABC_transporter-like	1170	1318
IPR003439	ABC_transporter-like	424	568

External Links

No external refs found!

Sopen04g005490

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation