Sopen04g006570


Description : Rhamnogalacturonate lyase family


Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g006570
Cluster HCCA clusters: Cluster_387

Target Alias Description ECC score Gene Family Method Actions
A4A49_40794 No alias hypothetical protein 0.03 Orthogroups_2024-Update
PSME_00024160-RA No alias (at1g09890 : 252.0) Rhamnogalacturonate lyase family... 0.04 Orthogroups_2024-Update
Seita.3G119000.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR029413 RG-lyase_II 960 1033
IPR029413 RG-lyase_II 398 454
IPR029411 RG-lyase_III 1046 1235
IPR029411 RG-lyase_III 470 591
IPR010325 Rhamnogal_lyase 57 243
IPR010325 Rhamnogal_lyase 721 807
IPR010325 Rhamnogal_lyase 654 715
No external refs found!