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  5. Sopen04g006570

Sopen04g006570


Description : Rhamnogalacturonate lyase family


Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g006570
Cluster HCCA clusters: Cluster_387

Target Alias Description ECC score Gene Family Method Actions
A4A49_40794 No alias hypothetical protein 0.03 Orthogroups_2024-Update
PSME_00024160-RA No alias (at1g09890 : 252.0) Rhamnogalacturonate lyase family... 0.04 Orthogroups_2024-Update
Seita.3G119000.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 960 1033
IPR029413 RG-lyase_II 398 454
IPR029411 RG-lyase_III 1046 1235
IPR029411 RG-lyase_III 470 591
IPR010325 Rhamnogal_lyase 57 243
IPR010325 Rhamnogal_lyase 721 807
IPR010325 Rhamnogal_lyase 654 715
No external refs found!