Sopen04g007160

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000434_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen04g007160
Cluster	HCCA clusters: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
Sopen00g008040	No alias	Integrase core domain	0.04	Orthogroups_2024-Update
Sopen02g004700	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.01	Orthogroups_2024-Update
Sopen02g006720	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen02g010420	No alias	gag-polypeptide of LTR copia-type	0.03	Orthogroups_2024-Update
Sopen02g024440	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen03g013670	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.01	Orthogroups_2024-Update
Sopen05g011200	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen07g020500	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.01	Orthogroups_2024-Update
Sopen07g028620	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.01	Orthogroups_2024-Update
Sopen10g017780	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.05	Orthogroups_2024-Update
Sopen10g017790	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen11g010500	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
evm.model.contig_4504.1	No alias	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013103	RVT_2	1217	1458
IPR001584	Integrase_cat-core	824	937
IPR001878	Znf_CCHC	282	297
IPR025724	GAG-pre-integrase_dom	740	809

External Links

No external refs found!