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  5. Sopen04g007490

Sopen04g007490


Description : PPR repeat family


Gene families : OG_42_0008246 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008246_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g007490
Cluster HCCA clusters: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
A4A49_15818 No alias pentatricopeptide repeat-containing protein, chloroplastic 0.03 Orthogroups_2024-Update
Potri.006G264800 No alias proton gradient regulation 3 0.03 Orthogroups_2024-Update
Sobic.001G333000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc04g015440 No alias Pentatricopeptide repeat-containing protein, putative... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 632 681
IPR002885 Pentatricopeptide_repeat 984 1033
IPR002885 Pentatricopeptide_repeat 1054 1098
IPR002885 Pentatricopeptide_repeat 879 926
IPR002885 Pentatricopeptide_repeat 562 599
IPR002885 Pentatricopeptide_repeat 423 469
IPR002885 Pentatricopeptide_repeat 1124 1164
IPR002885 Pentatricopeptide_repeat 953 982
IPR002885 Pentatricopeptide_repeat 602 628
IPR002885 Pentatricopeptide_repeat 390 419
IPR002885 Pentatricopeptide_repeat 699 731
IPR002885 Pentatricopeptide_repeat 481 534
IPR002885 Pentatricopeptide_repeat 237 297
IPR002885 Pentatricopeptide_repeat 305 362
No external refs found!