Sopen04g007580

Description : B3 DNA binding domain

Gene families : OG_42_0002895 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002895_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen04g007580

Target	Alias	Description	ECC score	Gene Family Method
Sopen01g019060	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen03g026840	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen05g021470	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen06g014830	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
evm.model.contig_3517.1	No alias	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
evm.model.contig_3776.2	No alias	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
evm.model.contig_694.1	No alias	(p10978\|polx_tobac : 109.0) Retrovirus-related Pol...	0.02	Orthogroups_2024-Update
evm.model.contig_867.1	No alias	(original description: no original description)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	60	146

External Links

No external refs found!