Sopen04g008350

Description : Nup93/Nic96

Gene families : OG_42_0004770 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004770_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen04g008350
Cluster	HCCA clusters: Cluster_194

Target	Alias	Description	ECC score	Gene Family Method
Kfl00358_0170	kfl00358_0170_v1.1	(at2g41620 : 554.0) Nucleoporin interacting component...	0.01	Orthogroups_2024-Update
Mp2g23730.1	No alias	NUP93 scaffold nucleoporin of nuclear pore complex	0.04	Orthogroups_2024-Update
PSME_00051998-RA	No alias	(at1g26850 : 325.0) S-adenosyl-L-methionine-dependent...	0.02	Orthogroups_2024-Update
Solyc04g016240	No alias	Nucleoporin interacting component (Nup93/Nic96-like)...	0.03	Orthogroups_2024-Update
evm.model.contig_3540.4	No alias	(at2g41620 : 80.9) Nucleoporin interacting component...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005643	nuclear pore	IEA	InterProScan predictions
MF	GO:0017056	structural constituent of nuclear pore	IEA	InterProScan predictions
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007231	Nucleoporin_int_Nup93/Nic96	247	849

External Links

No external refs found!