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  5. Solyc02g055510

Solyc02g055510


Description : LOW QUALITY:PIF1-like helicase (AHRD V3.3 *** G7JQP0_MEDTR)


Gene families : OG_42_0000057 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g055510
Cluster HCCA clusters: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g19290 No alias expressed protein 0.03 Orthogroups_2024-Update
Seita.2G155500.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEA InterProScan predictions
MF GO:0003678 DNA helicase activity IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006281 DNA repair IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
CC GO:0030896 checkpoint clamp complex IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
BP GO:0048523 negative regulation of cellular process IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
InterPro domains Description Start Stop
IPR003840 DNA_helicase 345 389
IPR010285 DNA_helicase_pif1-like 2 297
No external refs found!