Solyc02g055520

Description : AT hook motif-containing protein, putative (AHRD V3.3 *-* Q2R0W4_ORYSJ)

Gene families : OG_42_0000057 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc02g055520
Cluster	HCCA clusters: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method
Glyma.07G160600	No alias	PIF1 helicase	0.02	Orthogroups_2024-Update
Glyma.13G024401	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
LOC_Os01g07990	No alias	retrotransposon protein, putative, unclassified, expressed	0.03	Orthogroups_2024-Update
Potri.001G214200	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
Seita.6G118500.1	No alias	Unknown function	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0003909	DNA ligase activity	IEP	Predicted GO
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Predicted GO
MF	GO:0004470	malic enzyme activity	IEP	Predicted GO
MF	GO:0004471	malate dehydrogenase (decarboxylating) (NAD+) activity	IEP	Predicted GO
BP	GO:0006281	DNA repair	IEP	Predicted GO
BP	GO:0006310	DNA recombination	IEP	Predicted GO
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Predicted GO
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	Predicted GO
MF	GO:0016615	malate dehydrogenase activity	IEP	Predicted GO
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Predicted GO
BP	GO:0033554	cellular response to stress	IEP	Predicted GO
BP	GO:0051716	cellular response to stimulus	IEP	Predicted GO
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR025476	Helitron_helicase-like	55	183

External Links

No external refs found!