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  5. Sopen04g009640

Sopen04g009640


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g009640
Cluster HCCA clusters: Cluster_373

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g53570 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Solyc04g040100 No alias No description available 0.03 Orthogroups_2024-Update
Solyc10g012010 No alias No description available 0.04 Orthogroups_2024-Update
Solyc10g036800 No alias No description available 0.03 Orthogroups_2024-Update
Sopen10g020660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 493 509
IPR000477 RT_dom 826 985
IPR005162 Retrotrans_gag_dom 329 413
No external refs found!