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  5. Sopen04g010080

Sopen04g010080


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g010080
Cluster HCCA clusters: Cluster_322

Target Alias Description ECC score Gene Family Method Actions
HORVU6Hr1G047080.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G052870.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g61190 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g44770 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc08g044450 No alias No description available 0.05 Orthogroups_2024-Update
Sopen05g011340 No alias Integrase core domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 1262 1372
IPR023780 Chromo_domain 1566 1619
IPR000477 RT_dom 760 918
IPR005162 Retrotrans_gag_dom 263 356
No external refs found!