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  5. Sopen04g010110

Sopen04g010110


Description : PPR repeat


Gene families : OG_42_0008601 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008601_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g010110
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Bradi1g51400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.3G384600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.4G027600.1 No alias RNA editing factor *(COD1) 0.03 Orthogroups_2024-Update
Sobic.008G163400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc04g039940 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 116 146
IPR002885 Pentatricopeptide_repeat 544 573
IPR002885 Pentatricopeptide_repeat 376 397
IPR002885 Pentatricopeptide_repeat 147 177
IPR002885 Pentatricopeptide_repeat 84 108
IPR002885 Pentatricopeptide_repeat 56 80
IPR002885 Pentatricopeptide_repeat 478 502
IPR002885 Pentatricopeptide_repeat 178 208
IPR002885 Pentatricopeptide_repeat 237 268
IPR002885 Pentatricopeptide_repeat 300 347
IPR002885 Pentatricopeptide_repeat 404 450
No external refs found!