Sopen04g017460

Description : SBP domain

Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen04g017460
Cluster	HCCA clusters: Cluster_233

Target	Alias	Description	ECC score	Gene Family Method
Cre02.g104700	No alias	squamosa promoter-binding protein-like 12	0.02	Orthogroups_2024-Update
Cre16.g692500	No alias	squamosa promoter binding protein-like 10	0.03	Orthogroups_2024-Update
GRMZM2G111136	No alias	squamosa promoter binding protein-like 8	0.02	Orthogroups_2024-Update
LOC_Os09g31438	No alias	OsSPL17 - SBP-box gene family member, expressed	0.04	Orthogroups_2024-Update
Pp1s337_53V6	No alias	T7I23.32; squamosa promoter-binding protein-like 8...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	69	142

External Links

No external refs found!