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  5. Sopen04g021020

Sopen04g021020


Description : Integrase core domain


Gene families : OG_42_0000495 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000495_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g021020
Cluster HCCA clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Solyc08g016700 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g014450 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g016010 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen05g018860 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g021120 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g015620 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 274 385
No external refs found!