Solyc02g062780

Description : chromatin remodeling 1 (AHRD V3.3 *** AT5G66750.1)

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc02g062780
Cluster	HCCA clusters: Cluster_164

Target	Alias	Description	ECC score	Gene Family Method
130534	No alias	chromatin remodeling 4	0.03	Orthogroups_2024-Update
A4A49_40832	No alias	atp-dependent dna helicase ddm1	0.04	Orthogroups_2024-Update
At5g19310	No alias	Probable ATP-dependent DNA helicase CHR23...	0.03	Orthogroups_2024-Update
Brara.I00886.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Cre03.g158550	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.03	Orthogroups_2024-Update
Cre12.g508150	No alias	chromatin-remodeling protein 11	0.02	Orthogroups_2024-Update
GRMZM2G049168	No alias	SNF2 domain-containing protein / helicase...	0.03	Orthogroups_2024-Update
Glyma.07G250700	No alias	chromatin remodeling factor17	0.03	Orthogroups_2024-Update
Glyma.11G067500	No alias	chromatin remodeling 1	0.03	Orthogroups_2024-Update
Kfl00125_0020	kfl00125_0020_v1....	(at2g13370 : 403.0) chromatin remodeling 5 (CHR5);...	0.06	Orthogroups_2024-Update
LOC_Os06g14406	No alias	SYD, putative, expressed	0.02	Orthogroups_2024-Update
MA_104034g0010	No alias	(at5g66750 : 811.0) Protein is similar to SWI2/SNF2...	0.04	Orthogroups_2024-Update
Mp1g05480.1	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.02	Orthogroups_2024-Update
Mp5g24460.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.02	Orthogroups_2024-Update
PSME_00036208-RA	No alias	(at2g28290 : 200.0) Encodes a SWI2/SNF2-like protein in...	0.02	Orthogroups_2024-Update
Pp1s223_99V6	No alias	chromodomain helicase dna binding protein 5	0.02	Orthogroups_2024-Update
Pp1s65_183V6	No alias	chromatin remodeling complex subunit	0.03	Orthogroups_2024-Update
Seita.2G023300.1	No alias	chromatin remodeling factor *(DDM1)	0.04	Orthogroups_2024-Update
Sobic.002G021200.1	No alias	chromatin remodeling factor *(DDM1)	0.02	Orthogroups_2024-Update
Sopen06g019630	No alias	SNF2 family N-terminal domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006468	protein phosphorylation	IEA	InterProScan predictions
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003677	DNA binding	IEP	Predicted GO
MF	GO:0004097	catechol oxidase activity	IEP	Predicted GO
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Predicted GO
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Predicted GO
BP	GO:0006066	alcohol metabolic process	IEP	Predicted GO
BP	GO:0006259	DNA metabolic process	IEP	Predicted GO
BP	GO:0006260	DNA replication	IEP	Predicted GO
BP	GO:0006270	DNA replication initiation	IEP	Predicted GO
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Predicted GO
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Predicted GO
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Predicted GO
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Predicted GO
BP	GO:0019751	polyol metabolic process	IEP	Predicted GO
BP	GO:0032957	inositol trisphosphate metabolic process	IEP	Predicted GO
BP	GO:0043647	inositol phosphate metabolic process	IEP	Predicted GO
MF	GO:0047325	inositol tetrakisphosphate 1-kinase activity	IEP	Predicted GO
MF	GO:0051765	inositol tetrakisphosphate kinase activity	IEP	Predicted GO
MF	GO:0051766	inositol trisphosphate kinase activity	IEP	Predicted GO
MF	GO:0052725	inositol-1,3,4-trisphosphate 6-kinase activity	IEP	Predicted GO
MF	GO:0052726	inositol-1,3,4-trisphosphate 5-kinase activity	IEP	Predicted GO
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001245	Ser-Thr/Tyr_kinase_cat_dom	438	705
IPR000330	SNF2_N	1098	1388
IPR001650	Helicase_C	1417	1524

External Links

No external refs found!

Solyc02g062780

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation