Sopen04g022770

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen04g022770
Cluster	HCCA clusters: Cluster_350

Target	Alias	Description	ECC score	Gene Family Method
Glyma.03G111700	No alias	ethylene-responsive element binding factor 13	0.03	Orthogroups_2024-Update
HORVU1Hr1G060490.5	No alias	subgroup ERF-IV/DREB2 transcription factor	0.03	Orthogroups_2024-Update
PSME_00041310-RA	No alias	(at1g75490 : 82.8) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
Seita.1G341100.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Solyc01g095500	No alias	Sl Cytokinin Response Factor 5	0.02	Orthogroups_2024-Update
Solyc04g012050	No alias	Ethylene-responsive transcription factor (AHRD V3.3 -...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR029472	Copia-like_N	28	71
IPR001471	AP2/ERF_dom	853	902
IPR013103	RVT_2	552	660
IPR005162	Retrotrans_gag_dom	104	199

External Links

No external refs found!