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  5. Sopen04g022860

Sopen04g022860


Description : PPR repeat family


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g022860
Cluster HCCA clusters: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
80412 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
96927 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
A4A49_38131 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
AC216235.2_FG010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
At1g06140 No alias Pentatricopeptide repeat-containing protein At1g06140,... 0.02 Orthogroups_2024-Update
At1g26900 No alias Pentatricopeptide repeat-containing protein At1g26900,... 0.02 Orthogroups_2024-Update
At3g01580 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
At3g49170 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Orthogroups_2024-Update
At4g37380 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.03 Orthogroups_2024-Update
At5g03800 No alias Glycosyltransferase (Fragment)... 0.02 Orthogroups_2024-Update
At5g52850 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.03 Orthogroups_2024-Update
Bradi2g06450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g57730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.E01751.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G000674 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G001466 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G144071 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G332843 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G430710 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G474929 No alias mitochondrial editing factor 21 0.03 Orthogroups_2024-Update
GRMZM5G849971 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.02G144100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G227300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G264700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G129100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G206900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G127400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G208902 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G294900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G086600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G102800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G093800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.17G117001 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G288100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G023100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU2Hr1G027440.18 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G035330.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G073540.14 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G120410.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g13830 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g36350 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g02200 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g34720 No alias LOI1, putative, expressed 0.02 Orthogroups_2024-Update
MA_10157572g0010 No alias (at4g18750 : 548.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_27726g0010 No alias (at1g15510 : 744.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
MA_42352g0010 No alias (at2g13600 : 487.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_615077g0010 No alias (at3g12770 : 607.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
MA_68707g0010 No alias (at3g24000 : 546.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_68933g0010 No alias (at5g04780 : 542.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00001942-RA No alias (at3g57430 : 689.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00001944-RA No alias (at1g11290 : 488.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00024530-RA No alias (at4g18750 : 707.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00025402-RA No alias (at3g02010 : 629.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00032006-RA No alias (at2g13600 : 367.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00035796-RA No alias (at1g11290 : 732.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00037812-RA No alias (at4g13650 : 600.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00039458-RA No alias (at4g13650 : 677.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00056168-RA No alias (at3g61170 : 686.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Potri.001G019500 No alias SLOW GROWTH 1 0.02 Orthogroups_2024-Update
Potri.001G243800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.001G322100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.001G466066 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G074500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G088600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G164900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.010G161800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.013G089400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.015G138000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G076000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.1G077500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.2G109100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.2G177900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.2G203900.1 No alias RNA editing factor *(OTP87) 0.04 Orthogroups_2024-Update
Seita.3G224300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G218400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G124400.1 No alias RNA editing factor *(OTP81) 0.02 Orthogroups_2024-Update
Seita.7G139500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G068200.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Seita.9G151300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G341000.1 No alias RNA editing factor *(MEF25) 0.02 Orthogroups_2024-Update
Seita.9G355700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G477500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G489500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G001200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G200500.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G142400.2 No alias RNA editing factor *(PGN) 0.03 Orthogroups_2024-Update
Sobic.004G266300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G146400.4 No alias RNA editing factor *(MEF12) 0.02 Orthogroups_2024-Update
Sobic.010G067000.1 No alias RNA editing factor *(MEF29) 0.03 Orthogroups_2024-Update
Sobic.010G181000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc03g093630 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g114660 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc09g065710 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc10g008570 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g005960 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g071370 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc12g096680 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 547 578
IPR002885 Pentatricopeptide_repeat 381 408
IPR002885 Pentatricopeptide_repeat 253 276
IPR002885 Pentatricopeptide_repeat 148 170
IPR032867 DYW_dom 652 776
IPR002885 Pentatricopeptide_repeat 479 525
IPR002885 Pentatricopeptide_repeat 175 223
IPR002885 Pentatricopeptide_repeat 74 121
No external refs found!