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  5. Sopen04g025610

Sopen04g025610


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g025610
Cluster HCCA clusters: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
LOC_Os06g41690 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Pp1s303_12V6 No alias No description available 0.02 Orthogroups_2024-Update
Solyc01g016570 No alias No description available 0.02 Orthogroups_2024-Update
Solyc04g011970 No alias No description available 0.03 Orthogroups_2024-Update
Solyc08g063060 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g007360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g009970 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g008360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g014900 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen05g019250 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen07g008090 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen07g008680 No alias gag-polypeptide of LTR copia-type 0.02 Orthogroups_2024-Update
Sopen07g014860 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen11g014180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
evm.model.contig_3460.4 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_3718.1 No alias (p10978|polx_tobac : 570.0) Retrovirus-related Pol... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013103 RVT_2 67 135
No external refs found!