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  5. Sopen04g026030

Sopen04g026030


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000411 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g026030
Cluster HCCA clusters: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
At1g36020 No alias DEAD/DEAH-box RNA helicase family protein... 0.02 Orthogroups_2024-Update
GRMZM2G035068 No alias DEAD/DEAH box RNA helicase family protein 0.02 Orthogroups_2024-Update
Potri.013G110166 No alias DEAD/DEAH box RNA helicase family protein 0.05 Orthogroups_2024-Update
Seita.8G057700.1 No alias DNA translocase component *(FANCM) of FANCM-MHF DNA... 0.02 Orthogroups_2024-Update
Sopen08g003220 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006468 protein phosphorylation IEA InterProScan predictions
BP GO:0048544 recognition of pollen IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013103 RVT_2 617 857
IPR000719 Prot_kinase_dom 1535 1742
IPR003609 Pan_app 1384 1436
IPR000858 S_locus_glycoprot_dom 1244 1352
IPR001480 Bulb-type_lectin_dom 1109 1212
No external refs found!