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  5. Sopen04g026710

Sopen04g026710


Description : PPR repeat family


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g026710
Cluster HCCA clusters: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
109721 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
173093 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
94907 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
96927 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
At1g15510 No alias Pentatricopeptide repeat-containing protein At1g15510,... 0.04 Orthogroups_2024-Update
At2g01510 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.04 Orthogroups_2024-Update
At2g03880 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Orthogroups_2024-Update
At3g09040 No alias Pentatricopeptide repeat (PPR) superfamily protein... 0.03 Orthogroups_2024-Update
At3g13880 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.02 Orthogroups_2024-Update
At3g29230 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.02 Orthogroups_2024-Update
At4g02750 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Orthogroups_2024-Update
Bradi2g06450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g04890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Brara.A00474.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.C02021.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.D01221.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.D02088.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.F01619.1 No alias RNA editing factor *(ECD1) 0.04 Orthogroups_2024-Update
Brara.F03480.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Brara.H02105.1 No alias RNA editing factor *(OTP90) 0.03 Orthogroups_2024-Update
Brara.I04209.1 No alias RNA editing factor *(MEF100) 0.03 Orthogroups_2024-Update
Brara.J01844.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G176523 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G180600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.01G228000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Orthogroups_2024-Update
Glyma.02G006900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.03G189000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Glyma.04G057300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G125500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G244300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G159200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Orthogroups_2024-Update
Glyma.08G086500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G118200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G313200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.19G141800 No alias mitochondrial RNAediting factor 1 0.03 Orthogroups_2024-Update
HORVU2Hr1G053030.5 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G019130.5 No alias Unknown function 0.05 Orthogroups_2024-Update
MA_112849g0010 No alias (at3g09040 : 606.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_123466g0010 No alias (at3g57430 : 553.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
MA_135075g0020 No alias (at3g57430 : 714.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
MA_322292g0010 No alias (at4g18750 : 684.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_470025g0010 No alias (at3g57430 : 563.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
MA_89214g0010 No alias (at1g11290 : 690.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00002640-RA No alias (at4g13650 : 724.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00009521-RA No alias (at4g18750 : 696.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
Potri.001G243800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G175900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G074500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G043400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.005G019400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.007G146800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.010G086200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Potri.010G161800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.015G018700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.017G091600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.018G040100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.018G092400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.T137000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.2G247200.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.8G075300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G151300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G182501.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G337200.1 No alias RNA editing factor *(MEF10) 0.02 Orthogroups_2024-Update
Sobic.010G190900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g010510 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc01g081020 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g081290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc01g081560 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.05 Orthogroups_2024-Update
Solyc01g090510 No alias Pentatricopeptide repeat-containing protein, putative... 0.04 Orthogroups_2024-Update
Solyc01g094850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.04 Orthogroups_2024-Update
Solyc01g095160 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc01g110010 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc02g065030 No alias No description available 0.02 Orthogroups_2024-Update
Solyc02g079380 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc02g088650 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g006990 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g097850 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc03g116840 No alias BED zinc finger,hAT family dimerization domain (AHRD... 0.04 Orthogroups_2024-Update
Solyc03g119950 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc04g064750 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc05g013200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc05g023900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc06g084580 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.05 Orthogroups_2024-Update
Solyc07g055310 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc09g009950 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc09g010070 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc10g080220 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g005960 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.07 Orthogroups_2024-Update
Solyc11g005970 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g008940 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.04 Orthogroups_2024-Update
Solyc11g071370 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc12g042400 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen03g038830 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen04g008620 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen12g021390 No alias PPR repeat 0.06 Orthogroups_2024-Update
evm.model.tig00020553.200 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 393 441
IPR002885 Pentatricopeptide_repeat 596 642
IPR002885 Pentatricopeptide_repeat 226 273
IPR002885 Pentatricopeptide_repeat 292 338
IPR002885 Pentatricopeptide_repeat 798 846
IPR002885 Pentatricopeptide_repeat 699 729
IPR002885 Pentatricopeptide_repeat 771 797
IPR002885 Pentatricopeptide_repeat 497 523
IPR002885 Pentatricopeptide_repeat 129 158
IPR002885 Pentatricopeptide_repeat 202 221
IPR002885 Pentatricopeptide_repeat 469 494
IPR002885 Pentatricopeptide_repeat 570 593
No external refs found!