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  5. Sopen04g027980

Sopen04g027980


Description : Chitinase class I


Gene families : OG_42_0000525 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000525_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g027980
Cluster HCCA clusters: Cluster_380

Target Alias Description ECC score Gene Family Method Actions
A4A49_35699 No alias endochitinase ep3 0.04 Orthogroups_2024-Update
Brara.C02214.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E00367.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E00903.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G085280.3 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_102538g0010 No alias (p29022|chia_maize : 115.0) Endochitinase A precursor... 0.03 Orthogroups_2024-Update
MA_10427514g0010 No alias (p29022|chia_maize : 267.0) Endochitinase A precursor... 0.03 Orthogroups_2024-Update
MA_10430424g0010 No alias (p29022|chia_maize : 207.0) Endochitinase A precursor... 0.03 Orthogroups_2024-Update
MA_10431378g0010 No alias (at3g54420 : 211.0) encodes an EP3 chitinase that is... 0.03 Orthogroups_2024-Update
PSME_00030534-RA No alias (at3g54420 : 238.0) encodes an EP3 chitinase that is... 0.02 Orthogroups_2024-Update
PSME_00030535-RA No alias (at3g54420 : 248.0) encodes an EP3 chitinase that is... 0.03 Orthogroups_2024-Update
PSME_00039570-RA No alias (p29023|chib_maize : 253.0) Endochitinase B precursor... 0.02 Orthogroups_2024-Update
PSME_00047416-RA No alias (p29022|chia_maize : 241.0) Endochitinase A precursor... 0.03 Orthogroups_2024-Update
PSME_00050706-RA No alias (p29022|chia_maize : 237.0) Endochitinase A precursor... 0.02 Orthogroups_2024-Update
Seita.7G150600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G132500.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEA InterProScan predictions
BP GO:0006032 chitin catabolic process IEA InterProScan predictions
MF GO:0008061 chitin binding IEA InterProScan predictions
BP GO:0016998 cell wall macromolecule catabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001002 Chitin-bd_1 28 59
IPR000726 Glyco_hydro_19_cat 79 278
No external refs found!